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| Contents | |
| A. General Information | D. Databases |
| B. Algorithms | E. Other Resources |
| C. Software/Web Tools | |
Also see Life Sciences page
B. Algorithms and Computational Biology
| Algorithms for Molecular Biology: Course Archive | www.math.tau.ac.il/~rshamir/algmb.html | ||||||
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| Formal Grammars | Chapter 11, Stochastic Grammars and Linguistics Bioinformatics: The Machine Learning Approach |
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| Information Theory | Appendix B, Information Theory, Entroyp, and
Relative Entropy Bioinformatics: The Machine Learning Approach |
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| Machine Learning | Chapter 2, Machine Learning Foundations:
The Probabilistic Framework Chapter 4, Machine Learning Algorithms Bioinformatics: The Machine Learning Approach |
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| Markov Models | Chapter 7, Hidden Markov Models: The
Theory Chapter 8, Hidden Markov Models: Applications Bioinformatics: The Machine Learning Approach |
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| Neural Networks | Chapter 5, Neural Networks: The Theory Bioinformatics: The Machine Learning Approach |
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| NIH | Computational Molecular Biology at NIH http://molbio.info.nih.gov/molbio |
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| Probabilistic Modeling | Chapter 3, Probabilistic Modeling and
Inference: Examples Appendix C. Probabilistic Graphical Models Bioinformatics: The Machine Learning Approach |
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| Statistics | Appendix A. Statistics Bioinformatics: The Machine Learning Approach |
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| Tutorials |
Biocomputing Tutorials |
| Links | Software for Molecular Biology (NIH) http://molbio.info.nih.gov/molbio/software.html |
| Molecular Biology Tools | www.molbiol.net
A Pack of Molecular Analysis Tools |
| Perl | Perl
for Bioinformatics
How Perl Saved the Human Genome Project The Bioperl Project Perl implementation of some basic sequence comparison algorithms Perl Module Documentation by the Sanger Centre Perl for biologists Perl reference materials |
| Sequence Analysis | Sequence Analysis Tools (NIH) http://molbio.info.nih.gov/molbio/analysis.html |
| Visualization | Molecular Visualization Freeware,
www.umass.edu/microbio/rasmol
OpenRasMol is a program for molecular graphics visualization, www.openrasmol.org |
| Databases | Nucleic Acids, Proteins, Chromosomes, Factors
& Motifs, Enzymes, ... http://molbio.info.nih.gov/molbio/db.html
(NIH)
Chapter 12, Internet Resources and Public Databases |
| Links | Bioinformatics Databases http://evol.nott.ac.uk/cmelun/links.html#data Genome Databases |
| Bioinformatics Resource | CCP11 project (Collaborative Computational Project 11) was established to foster the broad bioinformatics community and the UK research community in particular. Its purpose is to facilitate the transfer of knowledge and expertise through conferences, workshops, a newsletter and the use of the world wide web. www.hgmp.mrc.ac.uk/CCP11 |
| Glossary | Bioinformatics glossary www.genomicglossaries.com/content/Bioinformatics_gloss.asp |
| Links | World of Bioinformatics Links http://evol.nott.ac.uk/cmelun/links.html Bioinformatics Links Bioinformatics Resources |
| Sequence Analysis | Information about Sequence Analysis http://molbio.info.nih.gov/molbio/molbio_docs.html |
| Whitehead Library | http://web.wi.mit.edu/library |
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Links Verified 10 Aug 2002
Updated 27 Aug 2005
since 4 June 2001
